130 phd programs at 41 Japanese universities — all taught entirely in English, no Japanese required at entry.
🎓 Filter PhD Programs →PhD programs in Japan are research-focused and advisor-driven. You'll work in a lab under close supervision, often with funding through your professor's research grants or MEXT/JASSO scholarships. The typical timeline is 3–5 years, with significant variation by field. Before applying, you must secure a professor's consent — this usually means emailing potential supervisors with a research proposal and CV, then visiting (or video-calling) to discuss fit. The kenkyusei route lets you spend a year in Japan preparing for PhD entrance exams while connecting with your future lab. Industry placements after completion are strong in STEM fields, though academia remains competitive.
Jump directly to filtered results in the Program Finder:
🏛️ Hosei University
September · First-year total approx. ¥980,000; ¥780,000/yr thereafter (AY2026 external-applicant row); all subjects in English. Mandatory supervisor pre-matching required before application
🏛️ Toyo University
September · ¥1,020,000 first year. Kawagoe campus
🏛️ University of Tokyo
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ University of Tokyo
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ University of Tokyo
October · ~¥535,800/yr (~₹3 lakh)
🏛️ University of Tokyo
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ University of Tokyo
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Institute of Science Tokyo
April, September · ~¥535,800/yr (~₹3 lakh)
🏛️ Osaka University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Osaka University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Nagoya University
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Kyushu University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Hokkaido University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Keio University
April, September · ~¥1.7M/yr (~₹9.5 lakh)
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ Yokohama National University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Yokohama National University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Saitama University
April, September · ~¥535,800/yr (~₹3 lakh); tuition rising to ¥642,960/yr from AY2027
🏛️ Aoyama Gakuin University (AGU)
October · ¥435,000/yr + ¥290,000 entrance; 1st-yr ~¥1,054,000 AY2026; 3-year program; NOTE: 3 of 8 courses not accepting applications (Fundamental Science, Biological Science, Mechanical Engineering)
🏛️ Tokyo University of Agriculture and Technology (TUAT)
April, October · ¥282,000 admission; doctoral tuition — contact university for current rates; all lectures conducted in English
🏛️ Meiji University
April · First-year total approx. ¥1,103,000 (AY2027); all subjects in English
🏛️ Meiji University
April · First-year total approx. ¥1,103,000 (AY2027); all subjects in English; CS/AI-adjacent programme
🏛️ Shibaura Institute of Technology
April, September · Year 1 ~¥1,101,800 (incl. ¥260k enrollment); Years 2-3 ¥841,800/yr. Toyosu campus
🏛️ Waseda University
April, September · ~¥1,000,000–1,006,000 first year (AY2027). English-based degree program
🏛️ Toyohashi University of Technology (TUT)
October ·
🏛️ Okinawa Inst. of Science & Tech (OIST)
September · Stipend + tuition waived
🏛️ Akita University
April, October · ~¥535,800/yr (~₹3 lakh); admission ¥282,000 + application ¥30,000. 3-yr doctoral, English-medium.
🏛️ Toyo University
April · Asaka campus; contact university for current doctoral tuition figures
🏛️ University of Tokyo
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Institute of Science Tokyo
April, September · ~¥535,800/yr (~₹3 lakh)
🏛️ Osaka University
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Hokkaido University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Hokkaido University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ University of Tsukuba
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ SOKENDAI (Graduate University for Advanced Studies)
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ Yokohama National University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Yokohama National University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Meiji University
April · First-year total approx. ¥1,103,000 (AY2027); all subjects in English
🏛️ Tokyo Univ. of Marine Science & Technology (TUMSAT)
April, October · ¥535,800/yr + ¥282,000 admission (national university standard). Doctoral programs in Applied Marine Biosciences and Applied Marine Environmental Studies
🏛️ Sophia University
April, September · Year 1 ¥1,023,600 (incl. ¥200k entrance), then ¥821,500/yr (AY2026 reference — revised annually). Must contact a dissertation supervisor ≥10 days before application window. Yotsuya Campus
🏛️ Keio University
April, September ·
🏛️ Waseda University
April, September · ~¥980,000–1,006,000 first year (AY2027). English-based degree program
🏛️ Waseda University
April, September · ~¥1,004,500–1,034,500 first year (AY2027). English-based degree program
🏛️ University of Tokyo
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ Nagasaki University
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Nagasaki University
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Kobe University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Kobe University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Keio University
April ·
🏛️ Institute of Science Tokyo
April, October · ~¥535,800/year (~₹3.2 lakh)
🏛️ University of Tokyo
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Nagoya University
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Kyushu University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Hokkaido University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Hokkaido University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Kobe University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tokyo University of Agriculture and Technology (TUAT)
April, October · Joint doctoral programme run by TUFS + TUAT + UEC (one programme, three admission routes); classes entirely in English; tuition at national-university rate — contact university for current figures
🏛️ Institute of Science Tokyo
September · AY2026 guideline reference: ~¥535,800/yr. RIKEN covers living expenses/housing; tuition may be exempted on merit/need
🏛️ Waseda University
September, April · ~¥957,000 first year (AY2027)
🏛️ University of Tokyo
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Kyoto University
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Nagoya University
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Kyushu University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Yokohama National University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ GRIPS (National Graduate Institute for Policy Studies)
October · ¥642,960/yr (~₹3.6 lakh) + ¥282,000 admission + ¥30,000 application — standard GRIPS tuition for all students
🏛️ Waseda University
April, September · ~¥657,500 first year (AY2027)
🏛️ Tokyo International University
·
🏛️ Keio University
April ·
🏛️ University of Tokyo
April, September · ~¥535,800/yr (~₹3 lakh)
🏛️ University of Tokyo
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Hokkaido University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Hokkaido University
· ~¥535,800/yr (~₹3 lakh)
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ United Nations University (UNU-IAS)
September · USD 12,000/yr (~₹10 lakh/yr); jfUNU Scholarship for ODA countries (India) may cover ¥120,000/mo + tuition
🏛️ GRIPS (National Graduate Institute for Policy Studies)
October · Tuition covered by ICHARM/PWRI scholarship — eligibility: serving government officials in disaster/water management; 3-year program
🏛️ Sophia University
April, September · Pre-entrance total ~¥535,600 (entrance ¥200k once + ¥258.5k tuition/sem + ¥45k enhancement/sem + ¥30k enrollment/sem) (AY2026 reference — revised annually). Covers environmental economics/business, law/policy/sociology, science/engineering tracks. Yotsuya Campus
🏛️ Toyo University
April, September · Day/evening classes; contact university for current doctoral tuition figures
🏛️ University of Tokyo
September · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
October · ~¥535,800/yr + ¥282,000 admission (~₹3 lakh/yr)
🏛️ Meiji University
April · First-year total approx. ¥773,000 (AY2027) — among the lowest at any private Tokyo university; all subjects in English
🏛️ Waseda University
September · ~¥930,000 first year (AY2027)
🏛️ Waseda University
September · ~¥653,000 first year (AY2027)
🏛️ Waseda University
September · ~¥657,500 first year (AY2027)
🏛️ Osaka University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Waseda University
April, September · ~¥1.5M/yr (~₹8.4 lakh)
🏛️ Hiroshima University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Kobe University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ GRIPS (National Graduate Institute for Policy Studies)
October · ¥642,960/yr (~₹3.6 lakh) + ¥282,000 admission; requires existing master's degree (TOEFL 550 / iBT 79 / IELTS 6.0)
🏛️ Tokyo University of Foreign Studies (TUFS)
April, October · Joint doctoral programme run by TUFS + TUAT + UEC (one programme, three admission routes); classes entirely in English; tuition at national-university rate — contact university for current figures
🏛️ Sophia University
April, September · Year 1 ¥803,100 (incl. ¥200k entrance), then ¥601,000/yr (AY2026 reference — revised annually). Yotsuya Campus
🏛️ Tokyo University of Foreign Studies
October · ¥535,800/year; admission ¥282,000; application ¥30,000 (AY2026). October intake only (no spring)
🏛️ Tohoku University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tohoku University
October · ~¥535,800/yr + ¥282,000 admission (~₹3 lakh/yr)
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ Temple University, Japan Campus
August · Contact program for current rates; Tokyo cohort
🏛️ Ochanomizu University
April, October · ⚠️ Eligibility: women only + non-Japanese citizenship required; adviser consultation required; paper-only application by registered mail; enrolment ¥282,000 + exam ¥30,000
🏛️ Chuo University
April · Contact university for current tuition; JLPT N1 exemption confirmed for English-only track
🏛️ Waseda University
April, September · ~¥755,000 first year (AY2027)
🏛️ University of Tokyo
October · ~¥535,800/yr (~₹3 lakh)
🏛️ Waseda University
April, September · ~¥1.5M/yr (~₹8.4 lakh)
🏛️ Nara Institute of Science & Technology (NAIST)
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Japan Advanced Institute of Science & Technology (JAIST)
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Chiba University
April, October · ¥642,960/yr (~₹3.5 lakh) AY2026
🏛️ University of Electro-Communications (UEC)
April, October · Joint doctoral programme run by TUFS + TUAT + UEC (one programme, three admission routes); classes entirely in English; tuition at national-university rate — contact university for current figures
🏛️ Toyo University
April, September · Doctoral program capacity 3; contact university for current tuition figures
🏛️ Hitotsubashi University
September · ~¥642,960/yr (~₹3.5 lakh); ICS higher than national standard
🏛️ Yokohama National University
April, October · ~¥535,800/yr (~₹3 lakh)
🏛️ Tokyo International University
April, September ·
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